illustration

We are:

  • Building
    genomic surveillance capacity in low and middle-income countries
  • Growing
    a global network of labs with AMR expertise
  • Generating
    actionable data
  • Supporting
    public health programmes

Genomic Surveillance of Antimicrobial Resistance

We are targeting the most relevant pathogen-antibiotic combinations at each collaborating surveillance unit; analysing pathogen sequence data, basic anonymised patient information, and information about how samples were collected. Understanding the changing profile of antimicrobial resistance enables public health programmes to respond accordingly, locally, regionally and ultimately nationally.

Capacity Building

Laboratory Infrastructure: Implementing whole genome sequencing of pathogens at laboratories in LMICs.


Training: Providing workshops with the Wellcome Genome Campus Advanced Courses Programme.


Data Infrastructure: Analysis and interpretation through tools developed at the Centre for Genomic Pathogen Surveillance.

National Action

Linking genomic and epidemiological surveillance data at a national level, enabling more targeted interventions for infection control for identifying and managing AMR outbreaks once they have occurred and helping prevent further spread.

Structured Pathogen Surveys

Sequencing up to 10,000 targeted pathogen samples each year, to characterise populations of AMR bacteria, and understand how these are changing over time.

Global Open Data

Data generated by each national unit (collected across an extensive network of sentinel sites) will be shared with the international community.


We will share data as it becomes available through the open platforms PathogenWatch and Microreact developed by the Centre for Genomic Pathogen Surveillance, and through public sequence databases such as the ENA.

Our Background

Learn more about the GHRU, who we are, and what we’re doing to tackle antimicrobial resistance.

Our Locations

To achieve global surveillance, we’ve established units in the UK, Colombia, India, Nigeria and The Philippines.


  • Colombia
  • India
  • Philippines


  • Nigeria
  • UK
  • WHONET

Our Partners

Partner Photo

Prof. K.L. Ravikumar

Chief of Central Research Laboratory

KIMS Hospital and Research Centre, Bangalore

India

Established and leads a network of 125+ laboratories and hospitals in India. Developed molecular methods to identify and type S.pneumoniae and culture clinical samples. Infection Control Committee Chairman, Sentinel Surveillance Programme member and Advisory Board member on antimicrobial resistance

Partner Photo

Dr. Celia Carlos

Deputy Director

Research Institute for Tropical Medicine

Philippines

Paediatric infectious disease specialist. Expanded sentinel sites in the Philippines. President of the Paediatric Infectious Disease Society, she founded the Alliance for Prudent Use of Antibiotics, and represented the Philippines to the World Health Organization, Global Salmonella Surveillance, and WHO Gonococcal Resistance Surveillance Programme in the Western Pacific.

Partner Photo

Prof. Iruka Okeke

Professor of Pharmaceutical Microbiology

University of Ibadan

Nigeria

Consultant to the Nigerian Centre for Disease Control, Africa CDC, WHO and others. On the Surveillance and Epidemiology of Drug Resistant Infections Consortium advisory board of the Wellcome Trust. Researches antimicrobial resistance, molecular epidemiology, pathogenesis, E. coli, enteric bacteria, applications and uptake of microbiology in Africa; advocating antimicrobial resistance containment.

Partner Photo

Dr Pilar Donado-Godoy

Lead Investigator

Colombian Agriculture Research Corporation

Colombia

Public health veterinarian and epidemiologist. Founder of Colombia’s Programme for Integrated Surveillance of Antimicrobial Resistance - an international network establishing baselines for antimicrobial resistance of zoonotic bacteria. Works with the Pan American Health Organization of the WHO.

Partner Photo

Dr John Stelling

Co-Director of WHONET

Brigham and Women's Hospital, Boston

WHONET

Dr. John Stelling is an infectious disease specialist in Boston, Massachusetts. He received his medical degree from Johns Hopkins Medical School and has a Master's in Public Health from (MIT) Massachussett's Institute of Technology. Dr. Stelling has been in practice for 29 years.

Partner Photo

Prof. David Aanensen

Director

Centre for Genomic Pathogen Surveillance

UK

Senior Group Leader at Big Data Institute, University of Oxford. Within CGPS, provides data and tools for local and international utility, focusing on antimicrobial resistance and genomic surveillance. Examining pathogen surveys, David contextualises WGS datasets and population structure. He identifies important high-risk clones, risk assessment and management.

The GHRU Consortium

David Aanensen

Lead PI Central Hub, and Director of The GHRU

Khalil Abudahab

Senior Software Developer

Monica Abrudan

Postdoctoral researcher in Bioinformatics

Silvia Argimon

Genomic Epidemiologist

Harry Harste

Finance Implementation Manager

Mihir Kekre

NGS Operations Lead

Dawn Muddyman

Head of Operations & Programme Management

Ben Taylor

Senior Software Developer

Anthony Underwood

Bioinformatics Implementation Manager

Nicole Wheeler

Data Scientist

Independent Consultants

Ali Molloy

Independent Consultant

Anneke Schmider

Independent Consultant

Carolin Vegvari

Independent Consultant

Philippines National Surveillance Unit

Research Institute for Tropical Medicine Philippines

Celia Carlos

Director, Philippines National Surveillance Unit

Marietta Lagrada

Senior lab scientist / microbiologist

Polle K. Macaranas

Lab scientist / microbiologist

Agnettah M. Olorosa

Lab scientist / microbiologist

June Gayeta

Bioinformatician

Melissa Ana Masim

Bioinformatician

Elmer M. Herrera

Financial and Management Officer

K. L. Ravikumar

Director, India National Surveillance Unit

Geetha Nagaraj

Senior lab manager / Project Coordinator

Varun Shammana

Bioinformatician

Vandana Govindan

Bioinformatician/WHONET

Akshata Prabhu

Research Associate

Darmavaram Sravani

Research Associate

Shincy M. R.

Research Associate

Rajitha G. V

Manager- Accounts

Nigeria National Surveillance Unit

The University of Ibadan

Iruka N Okeke

Director, Nigeria National Surveillance Unit

Anderson O. Oaikhena

Lab scientist / microbiologist

Ayorinde Oluwatobiloba Afolayan

Bioinformatician

Jolaade J Ajiboye

Project Coordinator / Admin Support

María del Pilar Donado Godoy

Director, Colombia National Surveillance Unit

Johan Fabian Bernal Morales

Bioinformatician

Alejandra Arevalo

Lab scientist / microbiologist

Maria Fernanda Valencia Guerrero

Lab scientist / microbiologist

Erik Cristopher Dustin Osma Castro

Administrative Professional

Meet Our Partners

Learn more about how we envisage developing and learning from our international collaboration.

Join Us

If you are interested in joining our network of sentinel sites for genomic surveillance of AMR, please contact us via details below.

Contact Details

NIHR Global Health Research Unit
Centre for Genomic Pathogen Surveillance
Wellcome Genome Campus
Hinxton, Cambridge
CB10 1SA UK
+44(0)1223 495356
info@ghru.net

Partner Institutions

  • KIMS Hospital and Research Centre, Bangalore
  • Research Institute for Tropical Medicine
  • University of Ibadan
  • Colombian Agriculture Research Corporation
  • WHONET
  • Centre for Genomic Pathogen Surveillance

Disclaimers